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zhanxw/checkVCF 22

Sanity check Variant Call Format (VCF) files.

zhanxw/anno 20

Anno is a variant annotation tool

jiwoongbio/FMAP 15

Functional Mapping and Analysis Pipeline for metagenomics and metatranscriptomics studies

zhanxw/cat 7

Arnold Cat

zhanxw/libMvtnorm 6

Multivariate normal distribution (C++)

zhanxw/cromwellDashboard 4

A Dashboard to Visualize Scientific Workflows in Cromwell

zhanxw/base 2

utility class such as String, File, FileReader, FileWriter, StringArray

zhanxw/Argument 1

Made command line argument simple to use (C++)

zhanxw/BayesSLAM 1

Bayesian Statistical Learning Approach for Microbiome

PR opened bioconda/bioconda-recipes

Update rust-bio-tools to 0.18.1

<!-- creator: autobump type: bump_version recipe: rust-bio-tools orig_version: 0.18.0 orig_build_number: 0 new_version: 0.18.1 new_build_bumber: 0 -->

Update rust-bio-tools: 0.18.00.18.1

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Releases https://github.com/rust-bio/rust-bio-tools/tags
Author @rust-bio

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Update hmftools-linx to 1.13

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Update hmftools-linx: 1.121.13

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Releases https://github.com/hartwigmedical/hmftools/releases
Author @hartwigmedical

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Update keggcharter to 0.1.2 (#26428)

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Update keggcharter to 0.1.2 autobump new version

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Update keggcharter: 0.1.10.1.2

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Author @iquasere

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pull request commentbioconda/bioconda-recipes

Update edta to 1.9.5

@oushujun is it still needed h5py<3.0.0 to the EDTA recipe?

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pull request commentbioconda/bioconda-recipes

Update maker to 3.01.03

bioconda-test Expected — Waiting for status to be reported Seems stuck here; attempting to trigger rebuild:

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PR opened bioconda/bioconda-recipes

Update braker2: add perl-math-utils for log_reg_prothints.pl

braker2 2.1.5 script log_reg_prothints.pl needs perl module Math::Utils for log_reg_prothints.pl:

$ conda create -c conda-forge -c bioconda -n braker2-env braker2=2.1.5=1
$ source activate braker2-env
(braker2-env) $ log_reg_prothints.pl
Can't locate Math/Utils.pm in @INC (you may need to install the Math::Utils module) (@INC contains: /home/user/.conda/envs/braker2-env/lib/site_perl/5.26.2/x86_64-linux-thread-multi /home/user/.conda/envs/braker2-env/lib/site_perl/5.26.2 /home/user/.conda/envs/braker2-env/lib/5.26.2/x86_64-linux-thread-multi /home/user/.conda/envs/braker2-env/lib/5.26.2 .) at /home/user/.conda/envs/braker2-env/bin/log_reg_prothints.pl line 9.
BEGIN failed--compilation aborted at /n/home12/nweeks/.conda/envs/braker2-env/bin/log_reg_prothints.pl line 9.
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[ci skip] Merge PR 26430 Merge PR #26430, commits were: * Add upper constraint to taxonkit version * Update pytaxonkit to 0.7.2

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Update pytaxonkit to 0.7.2 autobump new version

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Update pytaxonkit: 0.6.10.7.2

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Releases https://github.com/bioforensics/pytaxonkit/tags
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Author @bioforensics

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PR opened bioconda/bioconda-recipes

Update bbmap to 38.88

<!-- creator: autobump type: bump_version recipe: bbmap orig_version: 38.87 orig_build_number: 0 new_version: 38.88 new_build_bumber: 0 -->

Update bbmap: 38.8738.88

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Update pytaxonkit to 0.7.2

I will attempt to upload artifacts and merge this PR. This may take some time, please have patience.

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pull request commentbioconda/bioconda-recipes

Update pytaxonkit to 0.7.2

@bioconda-bot please merge

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pull request commentbioconda/bioconda-recipes

Update pytaxonkit to 0.7.2

Package(s) built on CircleCI are ready for inspection:

Arch Package Repodata
noarch pytaxonkit-0.7.2-py_0.tar.bz2 repodata.json

You may also use conda to install these:

  • For packages on noarch:
conda install -c https://138700-42372094-gh.circle-artifacts.com/0/tmp/artifacts/packages <package name>

Docker image(s) built:

Package Tag Install with docker
pytaxonkit 0.7.2--py_0 <details><summary>show</summary>curl "https://138700-42372094-gh.circle-artifacts.com/0/tmp/artifacts/images/pytaxonkit%3A0.7.2--py_0.tar.gz" \| gzip -dc \| docker load
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Update pytaxonkit to 0.7.2

@bioconda-bot please fetch artifacts

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Daniel Standage

commit sha d8f19b237b0ab9f7c2ade294de85a19a120f5c8a

Add upper constraint to taxonkit version

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pull request commentbioconda/bioconda-recipes

Update pytaxonkit to 0.7.2

Package(s) built on CircleCI are ready for inspection:

Arch Package Repodata
noarch pytaxonkit-0.7.2-py_0.tar.bz2 repodata.json

You may also use conda to install these:

  • For packages on noarch:
conda install -c https://138695-42372094-gh.circle-artifacts.com/0/tmp/artifacts/packages <package name>

Docker image(s) built:

Package Tag Install with docker
pytaxonkit 0.7.2--py_0 <details><summary>show</summary>curl "https://138695-42372094-gh.circle-artifacts.com/0/tmp/artifacts/images/pytaxonkit%3A0.7.2--py_0.tar.gz" \| gzip -dc \| docker load
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Update pytaxonkit to 0.7.2

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Sara Monzón

commit sha ccc3d968700e4a192179feaca5e5a4ab35bf98a5

Added bc as dependency (#26429) * Added bc as dependency * Add build number

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Added bc as dependency

Update PlasmidID recipe.


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PR opened bioconda/bioconda-recipes

Update pytaxonkit to 0.7.2

<!-- creator: autobump type: bump_version recipe: pytaxonkit orig_version: 0.6.1 orig_build_number: 0 new_version: 0.7.2 new_build_bumber: 0 -->

Update pytaxonkit: 0.6.10.7.2

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Releases https://github.com/bioforensics/pytaxonkit/tags
Recipe Maintainer(s) @standage
Author @bioforensics

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[ci skip] Merge PR 26410 Merge PR #26410, commits were: * Update seq2science to 0.4.3

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Update seq2science to 0.4.3 autobump new version

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Update seq2science: 0.4.20.4.3

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Author @vanheeringen-lab

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