Sanity check Variant Call Format (VCF) files.
zhanxw/anno 20
Anno is a variant annotation tool
Functional Mapping and Analysis Pipeline for metagenomics and metatranscriptomics studies
Arnold Cat
Multivariate normal distribution (C++)
A Dashboard to Visualize Scientific Workflows in Cromwell
utility class such as String, File, FileReader, FileWriter, StringArray
Made command line argument simple to use (C++)
Bayesian Statistical Learning Approach for Microbiome
PR opened bioconda/bioconda-recipes
<!-- creator: autobump type: bump_version recipe: rust-bio-tools orig_version: 0.18.0 orig_build_number: 0 new_version: 0.18.1 new_build_bumber: 0 -->
Update rust-bio-tools
: 0.18.0 → 0.18.1
Info | Link |
---|---|
Recipe | recipes/rust-bio-tools (click to view/edit other files) |
Releases | https://github.com/rust-bio/rust-bio-tools/tags |
Author | @rust-bio |
This pull request was automatically generated (see docs).
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PR opened bioconda/bioconda-recipes
<!-- creator: autobump type: bump_version recipe: hmftools-linx orig_version: 1.12 orig_build_number: 0 new_version: 1.13 new_build_bumber: 0 -->
Update hmftools-linx
: 1.12 → 1.13
Info | Link |
---|---|
Recipe | recipes/hmftools-linx (click to view/edit other files) |
Releases | https://github.com/hartwigmedical/hmftools/releases |
Author | @hartwigmedical |
This pull request was automatically generated (see docs).
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startedberty/berty
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push eventbioconda/bioconda-recipes
commit sha a50d43cf900983a8646500544d3d45f033a75668
Update keggcharter to 0.1.2 (#26428)
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PR merged bioconda/bioconda-recipes
<!-- creator: autobump type: bump_version recipe: keggcharter orig_version: 0.1.1 orig_build_number: 0 new_version: 0.1.2 new_build_bumber: 0 -->
Update keggcharter
: 0.1.1 → 0.1.2
Info | Link |
---|---|
Recipe | recipes/keggcharter (click to view/edit other files) |
Releases | https://github.com/iquasere/KEGGCharter/tags |
Recipe Maintainer(s) | @iquasere |
Author | @iquasere |
This pull request was automatically generated (see docs).
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pull request commentbioconda/bioconda-recipes
@oushujun is it still needed h5py<3.0.0 to the EDTA recipe?
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pull request commentbioconda/bioconda-recipes
bioconda-test Expected — Waiting for status to be reported Seems stuck here; attempting to trigger rebuild:
@BiocondaBot rebuild
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PR opened bioconda/bioconda-recipes
braker2 2.1.5 script log_reg_prothints.pl needs perl module Math::Utils for log_reg_prothints.pl:
$ conda create -c conda-forge -c bioconda -n braker2-env braker2=2.1.5=1
$ source activate braker2-env
(braker2-env) $ log_reg_prothints.pl
Can't locate Math/Utils.pm in @INC (you may need to install the Math::Utils module) (@INC contains: /home/user/.conda/envs/braker2-env/lib/site_perl/5.26.2/x86_64-linux-thread-multi /home/user/.conda/envs/braker2-env/lib/site_perl/5.26.2 /home/user/.conda/envs/braker2-env/lib/5.26.2/x86_64-linux-thread-multi /home/user/.conda/envs/braker2-env/lib/5.26.2 .) at /home/user/.conda/envs/braker2-env/bin/log_reg_prothints.pl line 9.
BEGIN failed--compilation aborted at /n/home12/nweeks/.conda/envs/braker2-env/bin/log_reg_prothints.pl line 9.
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commit sha 68bf29cb7480e6f8fce082b08cfb73e77bf366c3
[ci skip] Merge PR 26430 Merge PR #26430, commits were: * Add upper constraint to taxonkit version * Update pytaxonkit to 0.7.2
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PR merged bioconda/bioconda-recipes
<!-- creator: autobump type: bump_version recipe: pytaxonkit orig_version: 0.6.1 orig_build_number: 0 new_version: 0.7.2 new_build_bumber: 0 -->
Update pytaxonkit
: 0.6.1 → 0.7.2
Info | Link |
---|---|
Recipe | recipes/pytaxonkit (click to view/edit other files) |
Releases | https://github.com/bioforensics/pytaxonkit/tags |
Recipe Maintainer(s) | @standage |
Author | @bioforensics |
This pull request was automatically generated (see docs).
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PR opened bioconda/bioconda-recipes
<!-- creator: autobump type: bump_version recipe: bbmap orig_version: 38.87 orig_build_number: 0 new_version: 38.88 new_build_bumber: 0 -->
Update bbmap
: 38.87 → 38.88
Info | Link |
---|---|
Recipe | recipes/bbmap (click to view/edit other files) |
Releases | https://sourceforge.net/projects/bbmap/files/ |
This pull request was automatically generated (see docs).
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pull request commentbioconda/bioconda-recipes
I will attempt to upload artifacts and merge this PR. This may take some time, please have patience.
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pull request commentbioconda/bioconda-recipes
@bioconda-bot please merge
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pull request commentbioconda/bioconda-recipes
Package(s) built on CircleCI are ready for inspection:
Arch | Package | Repodata |
---|---|---|
noarch | pytaxonkit-0.7.2-py_0.tar.bz2 | repodata.json |
You may also use conda
to install these:
- For packages on noarch:
conda install -c https://138700-42372094-gh.circle-artifacts.com/0/tmp/artifacts/packages <package name>
Docker image(s) built:
Package | Tag | Install with docker |
---|---|---|
pytaxonkit | 0.7.2--py_0 | <details><summary>show</summary>curl "https://138700-42372094-gh.circle-artifacts.com/0/tmp/artifacts/images/pytaxonkit%3A0.7.2--py_0.tar.gz" \| gzip -dc \| docker load |
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pull request commentbioconda/bioconda-recipes
@bioconda-bot please fetch artifacts
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push eventbioconda/bioconda-recipes
commit sha d8f19b237b0ab9f7c2ade294de85a19a120f5c8a
Add upper constraint to taxonkit version
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pull request commentbioconda/bioconda-recipes
Package(s) built on CircleCI are ready for inspection:
Arch | Package | Repodata |
---|---|---|
noarch | pytaxonkit-0.7.2-py_0.tar.bz2 | repodata.json |
You may also use conda
to install these:
- For packages on noarch:
conda install -c https://138695-42372094-gh.circle-artifacts.com/0/tmp/artifacts/packages <package name>
Docker image(s) built:
Package | Tag | Install with docker |
---|---|---|
pytaxonkit | 0.7.2--py_0 | <details><summary>show</summary>curl "https://138695-42372094-gh.circle-artifacts.com/0/tmp/artifacts/images/pytaxonkit%3A0.7.2--py_0.tar.gz" \| gzip -dc \| docker load |
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pull request commentbioconda/bioconda-recipes
@bioconda-bot please fetch artifacts
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push eventbioconda/bioconda-recipes
commit sha ccc3d968700e4a192179feaca5e5a4ab35bf98a5
Added bc as dependency (#26429) * Added bc as dependency * Add build number
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PR merged bioconda/bioconda-recipes
Update PlasmidID recipe.
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PR opened bioconda/bioconda-recipes
<!-- creator: autobump type: bump_version recipe: pytaxonkit orig_version: 0.6.1 orig_build_number: 0 new_version: 0.7.2 new_build_bumber: 0 -->
Update pytaxonkit
: 0.6.1 → 0.7.2
Info | Link |
---|---|
Recipe | recipes/pytaxonkit (click to view/edit other files) |
Releases | https://github.com/bioforensics/pytaxonkit/tags |
Recipe Maintainer(s) | @standage |
Author | @bioforensics |
This pull request was automatically generated (see docs).
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push eventbioconda/bioconda-recipes
commit sha 13665f4047f588e8254ecfc6504d31ab87c3ba8a
[ci skip] Merge PR 26410 Merge PR #26410, commits were: * Update seq2science to 0.4.3
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PR merged bioconda/bioconda-recipes
<!-- creator: autobump type: bump_version recipe: seq2science orig_version: 0.4.2 orig_build_number: 0 new_version: 0.4.3 new_build_bumber: 0 -->
Update seq2science
: 0.4.2 → 0.4.3
Info | Link |
---|---|
Recipe | recipes/seq2science (click to view/edit other files) |
Releases | https://github.com/vanheeringen-lab/seq2science/tags |
Recipe Maintainer(s) | @Maarten-vd-Sande, @siebrenf, @tilschaef |
Author | @vanheeringen-lab |
This pull request was automatically generated (see docs).
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