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Tom Close tclose Monash Biomedical Imaging Centre Melbourne, Australia

NrgXnat/xnat-docker-compose 29

Build an XNAT server configuration with Docker Compose

tclose/Diophantine 5

A Python implementation of an algorithm for solving systems of diophantine equations

tclose/banana 2

A collection of Arcana Study classes that implement neuroimaging analysis pipelines

tclose/FouTS 1

A toolset written in C++ for characterising white matter tracts from dMRI using Fourier Tract Sampling (FouTS)

MonashBI/xnat-eeg-upload 0

A simple interactive script for uploading EEG/COG data to XNAT

tclose/arcana 0

Archive-centric NeuroImaging processing architecture based on NiPype

tclose/CompareNest 0

A Mock NEST environment for debugging of generated model code

tclose/ctopy 0

Hacking on ESR's ctopy the C to Python conversion tool: http://www.catb.org/~esr/ctopy/

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A Python module for use with Elsevier's APIs: Scopus, ScienceDirect, others.

http://api.elsevier.com

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Scripts to aid NIF reporting

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commit sha d0b46aa59ef8918514f693e73c4acd1ca8e25a4b

added mif.gz conversion format

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fixed up the error message when mrtrix isn't installed

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commit sha 327f2ca52414a889c049b63806897c688a1a71d1

added Python 3.7 and 3.8 to the valid languages of the package description

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commit sha 122ae6334cddfbd7e9c4f8b53501ead5bae2f835

fixed issues with types in xml option upped version to 0.6.3

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commit sha f5100cf387ce0891d2ec9633840a9b3179fc7b4a

removed strip

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commit sha 0867e4362a1add7c33459c2f1e28219ff3f88b32

update to 0.6.2 and fixed bug in scan type

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commit sha 063081ef48b2599695a9b5e8e0fc264fa1047dac

fixed issues with spaces in scan types

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commit sha 6611e64e95394f3a2f8018a9ce373e1e3d766b49

uppped minor version

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commit sha 988b22af079fca38b44b571edc75eb0803dedfd1

Updated help to include instructions on XML downloads

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commit sha a11723a4e500818fdf4b6a7621f32bc6be9efe7f

added ability to download from xml files (downloaded from the XNAT UI)

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commit sha de44f87ae98436676e625daf871044523e341157

Merge pull request #3 from MonashBI/down-xml added ability to download from xml files (downloaded from the XNAT UI)

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PR merged MonashBI/xnatutils

added ability to download from xml files (downloaded from the XNAT UI)

Ups version to 0.5.8 and adds functionality to download as specified from XML files downloaded from XNAT UI

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PR opened MonashBI/xnatutils

added ability to download from xml files (downloaded from the XNAT UI)

Ups version to 0.5.8 and adds functionality to download as specified from XML files downloaded from XNAT UI

+140 -50

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commit sha a11723a4e500818fdf4b6a7621f32bc6be9efe7f

added ability to download from xml files (downloaded from the XNAT UI)

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create barnchMonashBI/xnatutils

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create barnchMonashBI/xnatutils

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commit sha 36b22daa505e35d1c659d1cd1bc38325fc990af7

added readme

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create barnchMonashBI/Monash_rsPET-MR_prep

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created repositoryMonashBI/Monash_rsPET-MR_prep

Scripts used to prepare the Monash rsPET-MR dataset

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issue openedMonashBI/banana

Implement ISMRM abstraction DL integration

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issue openedMonashBI/banana

Generate dockerfile using neurodocker

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issue openedMonashBI/banana

Complete unit-tests and set up circle-ci

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issue openedMonashBI/banana

Make pipelines separate workflows

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issue openedMonashBI/banana

Implement header extraction methods in Banana

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issue openedMonashBI/banana

Implement AFD pipeline

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issue openedMonashBI/banana

Write analytic wrappers for debugging

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commit sha 4730408a4d297bf0ccb2161d48a94424809bc61b

all mrtrix interfaces extend from MRTrix3Base class from nipype

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commit sha be2a36378528bd12b8206c29cadee8f9d6670608

fixed up xnat unittests to include xnat fileset ID in the cache paths

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commit sha beb022323628bbf24204029f1e0d6075fce82766

added super.setUp to module unittest

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commit sha ac251682a96d314f603892700cc6bb40844c15c0

formatting

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commit sha 04f8791af0e20d1525e925b00d8b1b0463df1e7b

added cpus_per_task to all processor classes

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commit sha 238a1a5640f7272523ba383fa6baa0681f26cdec

added nthreads parameter to all pipelines

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added cpus_per_task to all processor classes

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