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Shenjun Zhong szho42 Monash University Melbourne Australia Research Scientist, Biomedical Imaging, Monash University, AU Data Scientist, Telstra, AU

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HTML/JS port of CUDA Occupancy Calculator http://news.developer.nvidia.com/2007/03/cuda_occupancy_.html

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Simple iOS version of Matthew Browne's AlertMarker Android sample app

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issue commentUCL/pet-rd-tools

Segmentation fault when running nm_validate and nm_extract

@KrisThielemans I will test with #47 and see how it goes from my side. thanks for all the information. We might be able to do some debugging into the CPP code and see where this error happens.

@skarrea : are you using the raw data as one dcm file, or in paired form (one dcm header + a binary file, e.g. .bf file). In our case, we are using the second form (two paired files).

skarrea

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issue commentUCL/pet-rd-tools

Segmentation fault when running nm_validate and nm_extract

thanks for the reply. Sorry that, we are not able to share the data at the moment.

We installed the latest version of all the dependencies (within in docker container): gcc - 8.3.0 ITK - 5.1.1 cmake - 3.18.4 boost - 1.61 glog - not relevant in the error

What is the versions of the dependencies in your working setup?

Maybe a shared docker image with working setup might be valuable?

skarrea

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issue commentUCL/pet-rd-tools

Segmentation fault when running nm_validate and nm_extract

This happens on my side as well, for both nm_validate and nm_extract. The error happends when the overloaded '*' is called.

Error log:

Using host libthread_db library "/lib/x86_64-linux-gnu/libthread_db.so.1". I20201019 04:56:05.504776 322 NMValidate.cpp:101] Started: Mon Oct 19 04:56:05 2020 I20201019 04:56:05.504864 322 NMValidate.cpp:102] Running 'nm_validate' version: 2.0.0 I20201019 04:56:05.505218 322 Common.hpp:190] Manufacturer: SIEMENS I20201019 04:56:05.505246 322 Common.hpp:198] Model name: Biograph_mMR I20201019 04:56:05.505270 322 MMR.hpp:135] Image type: ORIGINAL\PRIMARY\PET_LISTMODE

Program received signal SIGSEGV, Segmentation fault. 0x0000555c038aeda8 in gdcm::SmartPointergdcm::File::operator*() const () (gdb) info stack #0 0x0000555c038aeda8 in gdcm::SmartPointergdcm::File::operator*() const () #1 0x0000555c038ac6de in gdcm::Reader::GetFile() () #2 0x0000555c038a5a8e in nmtools::IMMR::ReadHeader() () #3 0x0000555c038a80d2 in nmtools::MMRSino::IsValid() () #4 0x0000555c038ab0bd in main ()

skarrea

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José Benardi de Souza Nunes

commit sha 200dc637efe9c6d6f912bc7cd828fa55321ff59d

Create Role model in Node DB (#684) * Add table Role to Node DB * Add seeding of Roles to Node DB on creation * Add tests for creation of new Roles on Node DB

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José Benardi de Souza Nunes

commit sha 69aa99605bf72b86424cc7a2e51c70dc3c712b25

Create User model in Network DB (#683) * Add User model to Network DB * Add User model related tests * Remove hash/salt from user string

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Théo Ryffel

commit sha b6206f1fe3b85588e0b3a03fa38c3c211827e6f8

Add support for FSS online key generation for data centric workers (#686) * Update README * Add support for FSS online key generation for data centric workers

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Ionésio Junior

commit sha 048be4ac52a53b5ca947b920e41de9a9e76a532a

Fix dataset search (#687) * Fix network search routes according to data_centric new routes] * Add --network flag / NETWORK env var to send a join request to the network * Add NETWORK environment vars * Fix code/doc style

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José Benardi de Souza Nunes

commit sha 8d227d70f8db66bb9acc85463bebb263b4d667e6

Create Group model in Node DB (#688) * Create Group model in Node DB * Fix code formatting * Replace group names for college names in tests

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Ionésio Junior

commit sha 695a041649f7cfab6acc7d1495e2a6132f65d529

Improve websocket performance (#690) * New method to mask payload Header fast using numpy * Monkey_patch websocket payload mask/unmask methods * Add numpy as a dependency * Add wsaccel package * Update poetry lock * Fix numpy dtype Co-authored-by: Patrick Cason <me@patrickcason.com>

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Vova Manannikov

commit sha 1ab1463c2d95c1546a5286ae8fa7ac4b664a9e19

[WIP] Update default ports (#691) * Update default ports * Make Network port cmd argument not mandatory * Rename ENV params

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José Benardi de Souza Nunes

commit sha 6940ddb89ea5903fe3199c6e2df4b30fab2d635e

Create User model in Node DB (#692) * Add User table and User-Group junction table * Add tests on creation of object for User table * Add tests for User/Group junction table

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Amr Kayid

commit sha 996b6abe1bd3b8a053e1c47eb9cca034088bafbc

Abstract core classes (#679) * Create FLManager Abstract class Class for model & data centered FL managers * Move WareHouse to core submodule Reorganizing... * Update imports for WareHouse class * Update FLManager class * Create ProcessManager abstract class * Create PlanManager class * ModelManager class for managing AI models and checkpoints * WorkerManager abstract class * fix small typo * Reformatt new files using black * Apply docformatter * fix warehouse typo * Update FLManager class * Create ProcessManager abstract class * Create PlanManager class * ModelManager class for managing AI models and checkpoints * WorkerManager abstract class * Move WareHouse to core submodule Update WareHourse imports as well * Fix import typo in WareHouse Class Co-authored-by: Ionésio Junior <ionesiojr@gmail.com> Co-authored-by: Patrick Cason <me@patrickcason.com>

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jmaunon

commit sha d3dd097680f46825e4e12fefa0d84242db497cdf

Add data-centric mnist tutorial (#694) * Add README to examples folder * Refactor names and ports - docker-compose: Rename containers and ports - tests/__init__.py: Update ports in order to be consistent Names are based on https://en.wikipedia.org/wiki/Alice_and_Bob * Update hosts names according to docker & tests * Make reference to host section from main README * Fix minor error * Add pre-commit-jupyter * Fix port error * Add network setup * Add 01-mnist-tutorial * Add test for 01-mnist-notebook * Add papermill as dev dependency * Add jupyter as dev dependency * Update instructions * Add jupyter to docker-compose * Modify hostnames * Add 2nd notebook * Minor modification * Add isort to pre-commit * Sort imports * Set download mnist * Updating ports numbers * Update README.md Co-authored-by: Patrick Cason <me@patrickcason.com>

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Amr Kayid

commit sha a1f3e862d3b6f4e175dfd7900d363c9390765aa4

Initial AWS Serverfull Deployment using Terraform (#678) * Initial AWS Serverfull Deployment using Terraform * Update .gitignore * Update .gitignore * Update .gitignore & remove unnecessary terraform files * Organize terraform files into deploy directory * Fix typo and remove .tfvar.example file * Add mapping between region and ami * Removed credentials from variables.tf * Added basic readme file * Update readme * Update README.md * Add aws credentials to main.tf * Add logging for shell script * Update deploy.sh * Update variables.tf * Add port 5000 for PyGrid Network * Update deploy.sh PyGrid Network is Running... * Add vm_names map for network and nodes deployment * Update Security Group Ports for PyGrid * Create multiple instance for each network and node * Update deploy.sh script Run the proper script for the instance type (Network, Node, Worker) in the deployed instance * Update variables.tf to include key connection * Update pygrid.txt file path * Using provisioner to export the names & ports to PyGrid * Output map of created instances with their IPs Co-authored-by: sachin-101 <sachinkumar04428@gmail.com> Co-authored-by: Patrick Cason <me@patrickcason.com>

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Nahua

commit sha 4ad52e36bc13f2d15a1df395187f853526b98f1f

Fix typo in docker build own image (#703)

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Ionésio Junior

commit sha 7868b407d582e67081c33ef211d22017cccf4b92

Delete stale.yml

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jmaunon

commit sha 2110cf7fab223bf603eefb34005d9a441e4cc11f

Update README.md (#705) * Update README.md Explain clearer that notebooks can be executed from the jupyter that is built when users make `docker-compose up` just making click to the jupyter address * Update from suggestion * Update README.md * Update README.md Co-authored-by: Ionésio Junior <ionesiojr@gmail.com> Co-authored-by: Patrick Cason <me@patrickcason.com>

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Dev Bharti

commit sha 0a837a14d000f29e1cd732f2fcdd3e901639c06f

Latest changes for introduction tutorial (#706) * Latest changes * Latest changes 1 * Update examples/data-centric/introduction/01-introduction-to-pygrid.ipynb Co-authored-by: Nahua <kangnahua@gmail.com> * Update examples/data-centric/introduction/01-introduction-to-pygrid.ipynb Co-authored-by: Nahua <kangnahua@gmail.com> * Update examples/data-centric/introduction/01-introduction-to-pygrid.ipynb Co-authored-by: Nahua <kangnahua@gmail.com> * Update examples/data-centric/introduction/01-introduction-to-pygrid.ipynb Co-authored-by: Nahua <kangnahua@gmail.com> * Update examples/data-centric/introduction/01-introduction-to-pygrid.ipynb Co-authored-by: Nahua <kangnahua@gmail.com> * Update examples/data-centric/introduction/01-introduction-to-pygrid.ipynb Co-authored-by: Nahua <kangnahua@gmail.com> * Update examples/data-centric/introduction/01-introduction-to-pygrid.ipynb Co-authored-by: Nahua <kangnahua@gmail.com> * Minor updates: - Update author info - Add try-except for GetNotPermittedError (if not test do not pass) * Update names to UpperCase * Add requests to connect to network * Update names to UpperCase * Fix space in name Co-authored-by: Nahua <kangnahua@gmail.com> Co-authored-by: Ionésio Junior <ionesiojr@gmail.com> Co-authored-by: jmaunon <juanmixp@gmail.com> Co-authored-by: Patrick Cason <me@patrickcason.com>

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Ionésio Junior

commit sha 6e13d683ff9d8ddc5329c1e4a59b29048084e184

Rearrange network path structure (#710) * Move internal files in order to keep the path structure used by the other apps - src/ -> src/app * Fix run file * update tests import references * Update conftest import reference

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Sachin Kumar

commit sha 0e93aa645a63a02f45ae72b4ff3106c6402dbadf

Serverless deployment of Network on AWS (HTTP) (#702) * Added terraform config files * Add lambda handler function Lambda handler function is an instance of FlaskLambda * Use poetry to create packaged dependencies * Organize files into folders * Added flask-lambda as dependency * Added IAM role for lambda function * Add sqlalchemy-aurora-data-api as dependency * Support Aurora serverless database :) * Talk to the database via Auora Data API * Added secret mangaer to stored database credentials in encrypted format * Fix issues with s3 bucket creation * Support environment variables in lambda function * Separate variables into files * Add create_lambda_app() function * Deployment successful *Removed default database credentials * Fix black issues * Fix db import issue * Run Poetry docformatter Co-authored-by: Patrick Cason <me@patrickcason.com>

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José Benardi de Souza Nunes

commit sha b5011e53393ffeb5ec86426dcc21f75b6ab4633a

Create Node API endpoints for Users (#708) * Implement User routes on Node app * Add procedure to clean database between tests * Add unit tests for User routes on Node app * Isolate crud logic in user requests in Node * Add websocket impl of User endpoints for Node app * Reuse objects throughout tests * Relay token / error handles to exclusive functions * Rename put functions according to their logic

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Patrick Cason

commit sha e078c392cada0ca67605dcd29d29d144e6c20579

Renaming usr to user everywhere

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Shenjun Zhong

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Merge pull request #1 from OpenMined/dev pull latest

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Shenjun Zhong

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python extension intellisense not working

@EzzPrograms that works for me. Reverting to an old version enables the intellisense. thanks

davegaulke

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