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osowiecki/bash-panel 0

panel / application launcher written in bash

issue openedsamtools/samtools

Samtools version of faidx returns multiple matches as it is not searching for exact matches. (1.7)

Samtools Version: 1.7 (using htslib 1.7)

Samtools version of faidx returns multiple matches as it is not searching for exact matches.

Original faidx works fine.

faidx clust_K0_MERGED "1971"

1971 CCCCTTCCCTCCCTCTACTGGGGCCCAGTCCACCGCCCACCCACCAGTTTCAACACATCACCATCACCACCAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATCACGGAAACTCTGGGCCCCCTCC

Samtools faids will mark 1971, 197122, 1971345 etc.

samtools faidx clust_K0_MERGED "1971"

1971 CCCCTTCCCTCCCTCTACTGGGGCCCAGTCCACCGCCCACCCACCAGTTTCAACACATCA CCATCACCACCAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATCACGGAAACTC TGGGCCCCCTCC

Was this fixed in the latest release?

created time in 6 days

issue openedlinzhi2013/MitoZ

circle_check.py default mismatch

What default value are you using?

created time in 7 days

issue commentalekseyzimin/masurca

ubuntu compile fail

So you're saying mascara is in conda? And I could install it via a separate environment?

https://anaconda.org/bioconda/masurca

yplee614

comment created time in 8 days

issue commentalekseyzimin/masurca

ubuntu compile fail

A year has passed. Try using a ready docker image of masurca or create a separate conda environment (conda create -n) and then activate it. If you really want to edit .bashrc, add system paths before conda paths. Libraries found earlier on the list should get priority.

For example :

cat /etc/environment #default system paths PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games/:/usr/games/"

source /etc/environment

PATH="$PATH:/home/anaconda/anaconda3/bin:/home/anaconda/ShortStack"

yplee614

comment created time in 8 days

issue commentAllanWang/Frost-for-Facebook

font scaling slider breaks after reset

ver 2.4.4

https://www.youtube.com/watch?v=syeE8JD8reU

osowiecki

comment created time in 2 months

issue openedAllanWang/Frost-for-Facebook

font scaling slider breaks after reset

Reset your font to default by long pressing the percentage. Now your slider is stuck at that value until you leave the appearance menu.

created time in 3 months

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