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openmrs/openmrs-react-components 18

Common React UI components

mogoodrich/courses 1

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mogoodrich/openmrs-module-uiframework 1

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openmrs/bacteriology 1

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OpenMRS module for bacteriology - Specimen, Culture, DST and Smear

mogoodrich/bahmni-core 0

Core OpenMRS modules for Bahmni (including ERP & ELIS Atom Feed Clients)

pull request commentopenmrs/openmrs-core

EMPT-174: Made cookies more secure.

Coverage Status

Coverage increased (+53.4%) to 63.574% when pulling 05d691f82e8619625e1ffff389aba393d673199e on jnsereko:EMPT-174 into 758fade3bb7efea0e8c5df45353e491a1b032d4e on openmrs:master.

jnsereko

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PR opened openmrs/openmrs-core

EMPT-174: Made cookies more secure.

<!--- Add a pull request title above in this format --> <!--- real example: 'TRUNK-5111: Replace use of deprecated isVoided' --> <!--- 'TRUNK-JiraIssueNumber: JiraIssueTitle' -->

Description of what I changed

I have made cookies more secure in OpenMRS by reducing setting up an expiry date of the cookie and setting the secure attribute to true such that an attacker can not access the cookie using Javascript <!--- It can simply be your commit message, which you must have -->

Issue I worked on EMPT-174

<!--- This project only accepts pull requests related to open issues --> <!--- Want a new feature or change? Discuss it in an issue first! --> <!--- Found a bug? Point us to the issue/or create one so we can reproduce it! --> <!--- Just add the issue number at the end: --> see https://issues.openmrs.org/browse/TRUNK-

Checklist: I completed these to help reviewers :)

<!--- Put an x in the box if you did the task --> <!--- If you forgot a task please follow the instructions below -->

  • [x] My IDE is configured to follow the code style of this project.

    No? Unsure? -> configure your IDE, format the code and add the changes with git add . && git commit --amend

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    No? -> write tests and add them to this commit git add . && git commit --amend

  • [x] I ran mvn clean package right before creating this pull request and added all formatting changes to my commit.

    No? -> execute above command

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PR closed openmrs/openmrs-contrib-qaframework

RATEST-61:Wrote allergies feature gherkin scenarios.

Added allergies.feature file with gherkin scenarios .

+45 -0

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pull request commentopenmrs/openmrs-contrib-qaframework

MF-532: Microfrontend Login E2E

Hi @joachim-junior, Thanks for your great work! May I know can you update the PR with the requested changes?

joachim-junior

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PR opened openmrs/openmrs-esm-cli

Bump glob-parent from 5.1.1 to 5.1.2

Bumps glob-parent from 5.1.1 to 5.1.2. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://github.com/gulpjs/glob-parent/releases">glob-parent's releases</a>.</em></p> <blockquote> <h2>v5.1.2</h2> <h3>Bug Fixes</h3> <ul> <li>eliminate ReDoS (<a href="https://github-redirect.dependabot.com/gulpjs/glob-parent/issues/36">#36</a>) (<a href="https://github.com/gulpjs/glob-parent/commit/f9231168b0041fea3f8f954b3cceb56269fc6366">f923116</a>)</li> </ul> </blockquote> </details> <details> <summary>Changelog</summary> <p><em>Sourced from <a href="https://github.com/gulpjs/glob-parent/blob/main/CHANGELOG.md">glob-parent's changelog</a>.</em></p> <blockquote> <h3><a href="https://github.com/gulpjs/glob-parent/compare/v5.1.1...v5.1.2">5.1.2</a> (2021-03-06)</h3> <h3>Bug Fixes</h3> <ul> <li>eliminate ReDoS (<a href="https://github-redirect.dependabot.com/gulpjs/glob-parent/issues/36">#36</a>) (<a href="https://github.com/gulpjs/glob-parent/commit/f9231168b0041fea3f8f954b3cceb56269fc6366">f923116</a>)</li> </ul> <h2><a href="https://www.github.com/gulpjs/glob-parent/compare/v5.1.2...v6.0.0">6.0.0</a> (2021-05-03)</h2> <h3>⚠ BREAKING CHANGES</h3> <ul> <li>Correct mishandled escaped path separators (<a href="https://github-redirect.dependabot.com/gulpjs/glob-parent/issues/34">#34</a>)</li> <li>upgrade scaffold, dropping node <10 support</li> </ul> <h3>Bug Fixes</h3> <ul> <li>Correct mishandled escaped path separators (<a href="https://github-redirect.dependabot.com/gulpjs/glob-parent/issues/34">#34</a>) (<a href="https://www.github.com/gulpjs/glob-parent/commit/32f6d52663b7addac38d0dff570d8127edf03f47">32f6d52</a>), closes <a href="https://github-redirect.dependabot.com/gulpjs/glob-parent/issues/32">#32</a></li> </ul> <h3>Miscellaneous Chores</h3> <ul> <li>upgrade scaffold, dropping node <10 support (<a href="https://www.github.com/gulpjs/glob-parent/commit/e83d0c5a411947cf69eb58f36349db80439c606f">e83d0c5</a>)</li> </ul> </blockquote> </details> <details> <summary>Commits</summary> <ul> <li><a href="https://github.com/gulpjs/glob-parent/commit/eb2c439de448c779b450472e591a2bc9e37e9668"><code>eb2c439</code></a> chore: update changelog</li> <li><a href="https://github.com/gulpjs/glob-parent/commit/12bcb6c45c942e2d05fc1e6ff5402e72555b54b6"><code>12bcb6c</code></a> chore: release 5.1.2</li> <li><a href="https://github.com/gulpjs/glob-parent/commit/f9231168b0041fea3f8f954b3cceb56269fc6366"><code>f923116</code></a> fix: eliminate ReDoS (<a href="https://github-redirect.dependabot.com/gulpjs/glob-parent/issues/36">#36</a>)</li> <li><a href="https://github.com/gulpjs/glob-parent/commit/0b014a7962789b2d8f2cf0b6311f40667aecd62c"><code>0b014a7</code></a> chore: add JSDoc returns information (<a href="https://github-redirect.dependabot.com/gulpjs/glob-parent/issues/33">#33</a>)</li> <li><a href="https://github.com/gulpjs/glob-parent/commit/2b24ebd64b2a045aa167c825376335555da139fd"><code>2b24ebd</code></a> chore: generate initial changelog</li> <li>See full diff in <a href="https://github.com/gulpjs/glob-parent/compare/v5.1.1...v5.1.2">compare view</a></li> </ul> </details> <br />

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tagopenmrs-sdk-4.0.1

OpenMRS SDK is a toolset which facilitates OpenMRS development

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SDK-285: Cannot create Docker container on Linux (#190)

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SDK-285: Cannot create Docker container on Linux

JIRA Issue: https://issues.openmrs.org/browse/SDK-285

Talk thread: https://talk.openmrs.org/t/why-the-sdk-can-not-find-this-plugin/33644

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SDK-285: Cannot create Docker container on Linux

JIRA Issue: https://issues.openmrs.org/browse/SDK-285

Talk thread: https://talk.openmrs.org/t/why-the-sdk-can-not-find-this-plugin/33644

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PR opened openmrs/openmrs-module-webservices.rest

RESTWS-821: Add REST resource with links to administration pages of installed modules

Description of what I changed

Added REST resource with links to administration pages of installed modules.

It can return a list of all administration links for installed modules at /openmrs/ws/rest/v1/administration-links/. It can also return list of administration links for given module id at /openmrs/ws/rest/v1/administration-links/{moduleId}.

Example response body can be found here: https://pastebin.com/q2deZqaL

To not rely on LegacyUI, I've copied AdministrationSectionExt from https://github.com/openmrs/openmrs-module-legacyui/blob/master/omod/src/main/java/org/openmrs/module/web/extension/AdministrationSectionExt.java into omod-common module. I'm wondering if that's a good solution though. If I didn't include this class, the SwaggerSpecificationCreatorTest test would fail with NoClassDefFoundError. @dkayiwa What do you think I should do with this? Fix the test and not include the Ext class or just leave it like right now?

Issue I worked on

see https://issues.openmrs.org/browse/RESTWS-821

Checklist: I completed these to help reviewers :)

  • [X] My pull request only contains ONE single commit (the number above, next to the 'Commits' tab is 1).

    No? -> read here on how to squash multiple commits into one

  • [X] My IDE is configured to follow the code style of this project.

    No? Unsure? -> configure your IDE, format the code and add the changes with git add . && git commit --amend

  • [X] I have added tests to cover my changes. (If you refactored existing code that was well tested you do not have to add tests)

    No? -> write tests and add them to this commit git add . && git commit --amend

  • [X] I ran mvn clean package right before creating this pull request and added all formatting changes to my commit.

    No? -> execute above command

  • [X] All new and existing tests passed.

    No? -> figure out why and add the fix to your commit. It is your responsibility to make sure your code works.

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    No? Unsure? -> execute command git pull --rebase upstream master

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SL-208 Added clinical impressions to mental health form

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pull request commentopenmrs/openmrs-core

maven(deps): bump jetty-maven-plugin from 9.4.35.v20201120 to 11.0.4

OK, I won't notify you again about this release, but will get in touch when a new version is available. If you'd rather skip all updates until the next major or minor version, let me know by commenting @dependabot ignore this major version or @dependabot ignore this minor version. You can also ignore all major, minor, or patch releases for a dependency by adding an ignore condition with the desired update_types to your config file.

If you change your mind, just re-open this PR and I'll resolve any conflicts on it.

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PR closed openmrs/openmrs-core

maven(deps): bump jetty-maven-plugin from 9.4.35.v20201120 to 11.0.4 dependencies java

Bumps jetty-maven-plugin from 9.4.35.v20201120 to 11.0.4. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://github.com/eclipse/jetty.project/releases">jetty-maven-plugin's releases</a>.</em></p> <blockquote> <h2>11.0.3</h2> <h1>Changelog</h1> <ul> <li><a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/3764">#3764</a> DeprecationWarning Decorator</li> <li><a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/5684">#5684</a> Review disabled tests</li> <li><a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/5798">#5798</a> jetty-runner startup error with jetty-10</li> <li><a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/5817">#5817</a> Provide more filtering for CustomRequestLog</li> <li><a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/6049">#6049</a> Default provider [files] section always executed</li> <li><a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/6084">#6084</a> GzipHandler: NPE in setDeflaterPoolCapacity and setInflaterPoolCapacity</li> <li><a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/6098">#6098</a> jetty-cdi is missing from jetty-bom</li> <li><a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/6099">#6099</a> Cipher preference may break SNI if certificates have different key types</li> <li><a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/6105">#6105</a> HttpConnection.getBytesIn() incorrect for requests with chunked content</li> <li><a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/6106">#6106</a> WebSocket/CDI integration is broken in Jetty 10</li> <li><a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/6125">#6125</a> Do not allow override of jakarta.* container classes by webapps per Servlet 5.0 Section 15.2.1</li> <li><a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/6132">#6132</a> Ambiguous segment in URI in DELETE /a/projects/foo/branches/refs%2Fheads%2Ftest request after upgrade from 10.0.0 to 10.0.2</li> <li><a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/6153">#6153</a> jetty-maven-plugin does not correctly pass JVM arguments for external deployMode</li> <li><a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/6159">#6159</a> Jetty with Conscrypt unable to handle any HTTPS requests when connected by IP rather than hostname.</li> <li><a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/6166">#6166</a> WebSocket MessageInputStream.read() spends a lot of time in ByteBuffer.compact()</li> <li><a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/6205">#6205</a> OpenIdAuthenticator may use incorrect redirect</li> <li><a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/6208">#6208</a> HTTP/2 max local stream count exceeded</li> <li><a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/6224">#6224</a> make jetty-jspc-maven-plugin <code>@threadsafe</code></li> <li><a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/6227">#6227</a> Better resolve race between <code>AsyncListener.onTimeout</code> and <code>AsyncContext.dispatch</code></li> <li><a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/6238">#6238</a> jetty-keystore Invalid manifest header Bundle-SymbolicName: ""</li> <li><a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/6250">#6250</a> Lazily allocate HTTP2Stream data queue</li> <li><a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/6251">#6251</a> Use CyclicTimeout for HTTP2Streams</li> <li><a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/6254">#6254</a> Total timeout not enforced for queued requests</li> <li><a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/6263">#6263</a> Review URI encoding in ConcatServlet & WelcomeFilter</li> <li><a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/6277">#6277</a> Better handle exceptions thrown from session destroy listener</li> <li><a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/6280">#6280</a> Copy ServletHolder class/instance properly during startWebapp</li> <li><a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/6287">#6287</a> Class loading broken for WebSocketClient used inside webapp</li> </ul> <h2>11.0.2</h2> <h1>Changelog</h1> <h1>:warning: Important Security related Changes</h1> <ul> <li><a href="https://github.com/eclipse/jetty.project/security/advisories/GHSA-26vr-8j45-3r4w">CVE-2021-28165</a> - <a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/6072">#6072</a> - jetty server high CPU when client send data length > 17408</li> <li><a href="https://github.com/eclipse/jetty.project/security/advisories/GHSA-v7ff-8wcx-gmc5">CVE-2021-28164</a> - <a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/6101">#6101</a> - Normalize ambiguous URIs</li> <li><a href="https://github.com/eclipse/jetty.project/security/advisories/GHSA-j6qj-j888-vvgq">CVE-2021-28163</a> - <a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/6102">#6102</a> - Exclude webapps directory from deployment scan</li> </ul> <h1>Other Changes</h1> <ul> <li><a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/4275">#4275</a> - Path Normalization/Traversal - Context Matching</li> <li><a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/5828">#5828</a> - Allow to create a WebSocketContainer passing HttpClient</li> <li><a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/5832">#5832</a> - Ctrl-C after jetty:run produces NoClassDefFoundError</li> <li><a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/5835">#5835</a> - Review Durable Filters, Servlets and Listeners</li> <li><a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/5977">#5977</a> - Cache-Control header set by a filter is override by the value from DefaultServlet configuration</li> <li><a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/5994">#5994</a> - QueuedThreadPool "free" threads</li> <li><a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/5996">#5996</a> - ERROR : No module found to provide logback-impl for logback-access{enabled}</li> <li><a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/5999">#5999</a> - HttpURI ArrayIndexOutOfBounds</li> </ul> <!-- raw HTML omitted --> </blockquote> <p>... (truncated)</p> </details> <details> <summary>Commits</summary> <ul> <li><a href="https://github.com/eclipse/jetty.project/commit/5bcdeb52aecbdeaf7f870d61fb03223c5944152f"><code>5bcdeb5</code></a> Updating to version 11.0.4</li> <li><a href="https://github.com/eclipse/jetty.project/commit/d96588efd978abfbb8c4eaa356bde2e3f7d44238"><code>d96588e</code></a> Merged branch 'jetty-10.0.x' into 'jetty-11.0.x'.</li> <li><a href="https://github.com/eclipse/jetty.project/commit/3a8af443f59ea140ec520c74f80c62ff9bfdf4f6"><code>3a8af44</code></a> Fixes <a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/6330">#6330</a> - CustomRequestLog is missing HTTP version format option. (<a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/6362">#6362</a>)</li> <li><a href="https://github.com/eclipse/jetty.project/commit/c11c8bbd5c8a0caf746c9506f269831a3d771a65"><code>c11c8bb</code></a> Merged branch 'jetty-10.0.x' into 'jetty-11.0.x'.</li> <li><a href="https://github.com/eclipse/jetty.project/commit/e3faf81860073f5adabb73ed46c74715e0b1ee8e"><code>e3faf81</code></a> Fix <a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/6114">#6114</a> Deploy symlink webapps (<a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/6317">#6317</a>)</li> <li><a href="https://github.com/eclipse/jetty.project/commit/de37267ae5cac405d044e49679e340d7913e3bd5"><code>de37267</code></a> Issue <a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/6327">#6327</a> Fix cookie leak test (<a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/6344">#6344</a>)</li> <li><a href="https://github.com/eclipse/jetty.project/commit/9cc7517d65b4dce64e0c115fbb722fac80ded033"><code>9cc7517</code></a> Issue <a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/6330">#6330</a> - Improve javadoc for CustomRequestLog %H</li> <li><a href="https://github.com/eclipse/jetty.project/commit/f50c4fd4b417addd7c092a68cbedd492dc82b7ff"><code>f50c4fd</code></a> Issue <a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/6327">#6327</a> Remove an invalid RequestTest</li> <li><a href="https://github.com/eclipse/jetty.project/commit/eee4a1a4fee8134eb440b47d6d9b6d915d407339"><code>eee4a1a</code></a> Merged branch 'jetty-10.0.x' into 'jetty-11.0.x'.</li> <li><a href="https://github.com/eclipse/jetty.project/commit/21aba4a72443a50081065ee64746c590c6a992c9"><code>21aba4a</code></a> Fixes <a href="https://github-redirect.dependabot.com/eclipse/jetty.project/issues/6323">#6323</a> - HttpClient requests with redirects gets stuck/never calls onCom...</li> <li>Additional commits viewable in <a href="https://github.com/eclipse/jetty.project/compare/jetty-9.4.35.v20201120...jetty-11.0.4">compare view</a></li> </ul> </details> <br />

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create barnchPIH/openmrs-config-pihsl

branch : wba-1162021-clinical-impressions

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pull request commentPIH/openmrs-module-pihmalawi

MLW 1200 Add IC3D column in appointment report

Good idea @kmatiya - I've done that.

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Make hibernate aware of parent/child class variable

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Make hibernate aware of patient class variable

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