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citation-style-language/zotero-bits 40

CSL-related community feedback for Zotero

gmarkall/oplus2_rose 7

Implementation of the OPlus2 translator using the ROSE compiler framework

gmarkall/oplus2_matlab 5

Mike Giles's OP2 implementation

gmarkall/manycore_form_compiler 4

MCFC is deprecated. See https://code.launchpad.net/~grm08/ffc/pyop2

gmarkall/mcfc_buildbot_config 3

Buildbot config for the manycore form compiler

bmiles/RCUK 2

RCUK Gateway to Research 2013 Hack for SME's.

amrishparmar/dojo-neural-network 1

Neural network experiments

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Florian Rathgeber

commit sha 1d739ec41a81ca18960edbbcbe168b6da785dd4c

Install pytest 5.4.3 in AppVeyor, upgrade setuptools

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Florian Rathgeber

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Disable AppVeyor tests while cram is broken on Windows

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Florian Rathgeber

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Next attempt to turn off testing on AppVeyor

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Florian Rathgeber

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Install pytest 5.4.3 in AppVeyor, upgrade setuptools

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Florian Rathgeber

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Florian Rathgeber

commit sha 0c5272abeb8301d05717bb2333571d7f1ee1a616

Travis: test with pytest 5.4.3 pytest-cram 0.2.1 is incompatible with pytest 6.0.

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pull request commenttbekolay/pytest-cram

Call CramItem.from_parent

@tbekolay could you release this in a new version? This is now a fatal error in pytest 6.0.

kynan

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startednbQA-dev/nbQA

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pull request commentkynan/nbstripout

added support for stripping output from Zeppelin Notebooks

That sounds reasonable! I'm still in favor of having a flag to --format which defaults to jupyter and also supports zeppelin, since that will work both with file input and reading from stdin.

ankitrokdeonsns

comment created time in 11 days

issue commentkynan/nbstripout

Pre-commit hook fails when a notebook is only partially staged

I think you'd need to stage all the changes the hook made before running it again. Otherwise it'll fail again in the same way.

nix1

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Marco Gorelli

commit sha a28e940157cda3238bd0f82a479f5b95efcbbe34

DOC no need to specify files in pre-commit example There is already ``` types: [jupyter] ``` in `.pre-commit-hooks.yaml`

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PR merged kynan/nbstripout

DOC no need to specify files in pre-commit example

There is already

types: [jupyter]

in .pre-commit-hooks.yaml

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MarcoGorelli

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pull request commentkynan/nbstripout

DOC no need to specify files in pre-commit example

Thanks!

MarcoGorelli

comment created time in 12 days

issue commentkynan/nbstripout

Not working across OS X and Linux?

@mereldawu, is /opt/conda/bin inside the container? The interpreter path is written at the point where you run nbstripout --install and the path of the active interpreter is used.

AllanLRH

comment created time in 12 days

issue commentkynan/nbstripout

Pre-commit Jupyter type installation issue.

afaict, pre-commit depends on identify. Do you have a way to reproduce the issue?

jcmuddle

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startedcri-o/cri-o

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issue commentkynan/nbstripout

flag to remove empty cell (with no data)

There's no way to do this right now, but I'll add this feature in the upcoming 0.4.0 release.

Zoynels

comment created time in 16 days

pull request commentkynan/nbstripout

added support for stripping output from Zeppelin Notebooks

Thank you for the pull request. There's a few points to discuss:

  1. Your PR only addresses the code path of calling nbstripout with a file argument. There is also the (more common) way of reading from stdin, which is used in the git filter.

  2. To handle the case of reading from stdin we need to either

    • detect the file type or
    • specify the file type using a flag

    My preference is being explicit using a flag e.g. --format which defaults to jupyter

  3. We'd need to decide how to handle the various flags nbstripout supports. Do they have equivalents for Zeppelin? Does Zeppelin have execution counts? Or notebook and cell level metadata? Tags?

    If it doesn't make sense to support these flags, what do we want to do when running in "Zeppelin mode" and an incompatible flag is passed? Ignore silently? Ignore with a warning? Fail?

Please also add tests and update the documentation as part of this pr.

ankitrokdeonsns

comment created time in 16 days

issue closedkynan/kynan.github.com

Typo in your site description

It says "pulic speaker", I think you mean "public speaker".

closed time in 16 days

SuzeShardlow

issue commentkynan/kynan.github.com

Typo in your site description

I did, thanks for fixing!

SuzeShardlow

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delete branch kynan/kynan.github.com

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dependabot[bot]

commit sha b89e0893887206aef3728171de63a95a36f1e044

Bump activesupport from 5.2.4.2 to 6.0.3.1 Bumps [activesupport](https://github.com/rails/rails) from 5.2.4.2 to 6.0.3.1. - [Release notes](https://github.com/rails/rails/releases) - [Changelog](https://github.com/rails/rails/blob/v6.0.3.1/activesupport/CHANGELOG.md) - [Commits](https://github.com/rails/rails/compare/v5.2.4.2...v6.0.3.1) Signed-off-by: dependabot[bot] <support@github.com>

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Florian Rathgeber

commit sha 6e9d683c77cd2f140a78264b83fcea1ad4adfce9

Merge pull request #1 from kynan/dependabot/bundler/activesupport-6.0.3.1 Bump activesupport from 5.2.4.2 to 6.0.3.1

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PR merged kynan/kynan.github.com

Bump activesupport from 5.2.4.2 to 6.0.3.1 dependencies

Bumps activesupport from 5.2.4.2 to 6.0.3.1. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://github.com/rails/rails/releases">activesupport's releases</a>.</em></p> <blockquote> <h2>6.0.3</h2> <p>In this version, we fixed warnings when used with Ruby 2.7 across the entire framework.</p> <p>Following are the list of other changes, per-framework.</p> <h2>Active Support</h2> <ul> <li> <p><code>Array#to_sentence</code> no longer returns a frozen string.</p> <p>Before:</p> <pre><code>['one', 'two'].to_sentence.frozen?

=> true

</code></pre> <p>After:</p> <pre><code>['one', 'two'].to_sentence.frozen?

=> false

</code></pre> <p><em>Nicolas Dular</em></p> </li> <li> <p>Update <code>ActiveSupport::Messages::Metadata#fresh?</code> to work for cookies with expiry set when <code>ActiveSupport.parse_json_times = true</code>.</p> <p><em>Christian Gregg</em></p> </li> </ul> <h2>Active Model</h2> <ul> <li>No changes.</li> </ul> <h2>Active Record</h2> <ul> <li> <p>Recommend applications don't use the <code>database</code> kwarg in <code>connected_to</code></p> <p>The database kwarg in <code>connected_to</code> was meant to be used for one-off scripts but is often used in requests. This is really dangerous because it re-establishes a connection every time. It's deprecated in 6.1 and will be removed in 6.2 without replacement. This change soft deprecates it in 6.0 by removing documentation.</p> <p><em>Eileen M. Uchitelle</em></p> </li> <li> <p>Fix support for PostgreSQL 11+ partitioned indexes.</p> <p><em>Sebastián Palma</em></p> </li> <li> <p>Add support for beginless ranges, introduced in Ruby 2.7.</p> <p><em>Josh Goodall</em></p> </li> </ul> </tr></table> ... (truncated) </blockquote> </details> <details> <summary>Changelog</summary> <p><em>Sourced from <a href="https://github.com/rails/rails/blob/v6.0.3.1/activesupport/CHANGELOG.md">activesupport's changelog</a>.</em></p> <blockquote> <h2>Rails 6.0.3.1 (May 18, 2020)</h2> <ul> <li> <p>[CVE-2020-8165] Deprecate Marshal.load on raw cache read in RedisCacheStore</p> </li> <li> <p>[CVE-2020-8165] Avoid Marshal.load on raw cache value in MemCacheStore</p> </li> </ul> <h2>Rails 6.0.3 (May 06, 2020)</h2> <ul> <li> <p><code>Array#to_sentence</code> no longer returns a frozen string.</p> <p>Before:</p> <pre><code>['one', 'two'].to_sentence.frozen?

=> true

</code></pre> <p>After:</p> <pre><code>['one', 'two'].to_sentence.frozen?

=> false

</code></pre> <p><em>Nicolas Dular</em></p> </li> <li> <p>Update <code>ActiveSupport::Messages::Metadata#fresh?</code> to work for cookies with expiry set when <code>ActiveSupport.parse_json_times = true</code>.</p> <p><em>Christian Gregg</em></p> </li> </ul> <h2>Rails 6.0.2.2 (March 19, 2020)</h2> <ul> <li>No changes.</li> </ul> <h2>Rails 6.0.2.1 (December 18, 2019)</h2> <ul> <li>No changes.</li> </ul> <h2>Rails 6.0.2 (December 13, 2019)</h2> <ul> <li> <p>Eager load translations during initialization.</p> <p><em>Diego Plentz</em></p> </li> <li> <p>Use per-thread CPU time clock on <code>ActiveSupport::Notifications</code>.</p> <p><em>George Claghorn</em></p> </li> </ul> <h2>Rails 6.0.1 (November 5, 2019)</h2> </tr></table> ... (truncated) </blockquote> </details> <details> <summary>Commits</summary> <ul> <li><a href="https://github.com/rails/rails/commit/34991a6ae2fc68347c01ea7382fa89004159e019"><code>34991a6</code></a> Preparing for 6.0.3.1 release</li> <li><a href="https://github.com/rails/rails/commit/2c8fe2ac0442bb78698dc9516882598020972014"><code>2c8fe2a</code></a> bumping version, updating changelog</li> <li><a href="https://github.com/rails/rails/commit/0ad524ab6e350412f7093a14f7a358e5f50b0c3f"><code>0ad524a</code></a> update changelog</li> <li><a href="https://github.com/rails/rails/commit/bd39a13cb9936e7261b271830950aae9bd0706bc"><code>bd39a13</code></a> activesupport: Deprecate Marshal.load on raw cache read in RedisCacheStore</li> <li><a href="https://github.com/rails/rails/commit/0a7ce52486adb36984174bd51257a0069fe7a9db"><code>0a7ce52</code></a> activesupport: Avoid Marshal.load on raw cache value in MemCacheStore</li> <li><a href="https://github.com/rails/rails/commit/b738f1930f3c82f51741ef7241c1fee691d7deb2"><code>b738f19</code></a> Preparing for 6.0.3 release</li> <li><a href="https://github.com/rails/rails/commit/509b9da209a8481fef8310bc14d6c6cd27c629dc"><code>509b9da</code></a> Preparing for 6.0.3.rc1 release</li> <li><a href="https://github.com/rails/rails/commit/02d07cccb736506b3dd6d465c8017c9010e74b28"><code>02d07cc</code></a> adds missing require [Fixes <a href="https://github-redirect.dependabot.com/rails/rails/issues/39042">#39042</a>]</li> <li><a href="https://github.com/rails/rails/commit/f2f7bcc047fa42344742e508016c65ed54419ade"><code>f2f7bcc</code></a> Fix Builder::XmlMarkup lazy load in Array#to_xml</li> <li><a href="https://github.com/rails/rails/commit/320734ea8a2cc518fe8f20b326d5c508afb40502"><code>320734e</code></a> Merge pull request <a href="https://github-redirect.dependabot.com/rails/rails/issues/36941">#36941</a> from ts-3156/master</li> <li>Additional commits viewable in <a href="https://github.com/rails/rails/compare/v5.2.4.2...v6.0.3.1">compare view</a></li> </ul> </details> <br />

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Suze Shardlow

commit sha 7515754536aa25c689d2ea67daa5423c17375eda

Fixes a typo in the site description

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Florian Rathgeber

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Merge pull request #3 from SuzeShardlow/patch-1 Fixes a typo in the site description

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PR merged kynan/kynan.github.com

Fixes a typo in the site description

Hi @kynan, issue #2 refers, hope this helps.

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SuzeShardlow

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pull request commentkynan/kynan.github.com

Fixes a typo in the site description

Thanks! :)

SuzeShardlow

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issue commentkynan/dokuvimki

Feature Request: Limit namespaces listed in index to those that are not empty

The sitemap shows you an "android" page, but DokuVimKi shows an "android" namespace. Does DokuVimKi show an android page too?

Also: on your wiki server, is there a directory called "android"? If so, does it still show up in DokuVimKi if you delete that directory?

alazyworkaholic

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startedcollectd/collectd

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Pull request review commentconda-forge/staged-recipes

Add recipe for rstcheck

+{% set name = "rstcheck" %}+{% set version = "3.3.1" %}++package:+  name: {{ name|lower }}+  version: {{ version }}++source:+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz+  sha256: 92c4f79256a54270e0402ba16a2f92d0b3c15c8f4410cb9c57127067c215741f++build:+  noarch: python+  number: 0+  script: "{{ PYTHON }} -m pip install . -vv"+  entry_points:+    - rstcheck = rstcheck:main++requirements:+  host:+    - python+    - pip+  run:+    - python+    - docutils >=0.7++test:+  imports:+    - rstcheck+  commands:+    - python -m rstcheck --help

Sorry, didn't see this in time. Added now!

kynan

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Florian Rathgeber

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Add pip check [ci skip]

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pull request commentkynan/nbstripout

fix attempting to install on python2

That is a good suggestion! Sorry, didn't see this before releasing 0.3.9 last weekend (as a py3 only release). What I really should have done is make 0.4.0 the first py3 only release. Maybe I'll tag a 0.3.10 as a py2 compatible release and then continue with 0.4.0.

casperdcl

comment created time in a month

issue commentkynan/nbstripout

nbstripout and git pull fails

Thanks both. I'll leave this on the backlog, in case someone comes along and wants to pick this up.

KrisThielemans

comment created time in a month

issue closedkynan/nbstripout

Windows newlines in diff --cached after git add with nbstripout

I installed nbstripout without arguments (locally) in the repository.

Then I added a "dirty" notebook, say with git add myNb.ipynb.

Ok, doing a check with git diff --cached - I don't see outputs or metadata (OK!), but all the inserted lines have a "^M" (carriage return) in the diff view.

I ran nbstripout myNb.ipynb and git status showed no changes. Even so, I re-ran git add myNb.ipynb and then git diff --cached showed a lot of newlines.

I also have nbdime installed, so I saw that the [diff ipynb] (or sth like that) section in .git/config and deleted it. The ugly JSON diffs with ^M disappeared, and the structured nbdime diff shows no appended newlines (but - it may actually mask the problem).

I can't be sure what is at fault here:

  • stripping while adding (adds newlines)?
  • the diff configuration (or underlying command) gives spurious output?
  • core.autocrlf=true doesn't work after configuring nbstripout?

I'd like to know, if this is a false alarm, or actual whitespace pollution to the repository.

closed time in a month

tgandor

pull request commentconda-forge/staged-recipes

Add recipe for rstcheck

Adding the entrypoint fixed this, thanks Anthony! I believe this is now good to go @conda-forge/help-python

kynan

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Florian Rathgeber

commit sha d16501f00faa24dca629d6d128966fbf6db6bc38

Add entrypoint

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Pull request review commentconda-forge/staged-recipes

Add recipe for rstcheck

+{% set name = "rstcheck" %}+{% set version = "3.3.1" %}++package:+  name: {{ name|lower }}+  version: {{ version }}++source:+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz+  sha256: 92c4f79256a54270e0402ba16a2f92d0b3c15c8f4410cb9c57127067c215741f++build:+  noarch: python+  number: 0+  script: "{{ PYTHON }} -m pip install . -vv"

Yes it should! Thanks :)

kynan

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issue commentkynan/nbstripout

Windows newlines in diff --cached after git add with nbstripout

@ooiM has this been addressed by #126? Can we close this?

tgandor

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updated v0.3.9

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Florian Rathgeber

commit sha 062e5d4cdb804d82d846e03d1ed809e39dc5a427

Merge pull request #16 from regro-cf-autotick-bot/0.3.9_ha33baa nbstripout v0.3.9

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nbstripout v0.3.9

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+2 -2

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regro-cf-autotick-bot

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created tagkynan/nbstripout

tag0.3.9

strip output from Jupyter and IPython notebooks

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Florian Rathgeber

commit sha 4777006ae7b5e2bb3de03877763d142b35b2681c

Add --extra-keys flag to pass extra keys to strip Closes #119

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Florian Rathgeber

commit sha 503233d46b950e5e3b5bcf755110af57098c83b3

Apply pre-commit hook to files of type Jupyter

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Florian Rathgeber

commit sha 1eb17476e86f6ebc94f974966547c6a2ee468775

Update changelog

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Florian Rathgeber

commit sha 11fb4a677a3a64ec491010104a1d41cfa0ebe666

Bump version: 0.3.8 → 0.3.9

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issue commentkynan/nbstripout

Not working across OS X and Linux?

FYI, since nbstripout can now be run as a module, we have changed the filters to use /path/to/your/python -m nbstripout i.e. it's still the full path to the interpreter, but no longer to the nbstripout entry point script. Does this help @AllanLRH ?

AllanLRH

comment created time in 2 months

issue commentkynan/nbstripout

Usage vs. Jupyter save hook

Using the global .gitconfig is now supported.

michaelaye

comment created time in 2 months

issue commentkynan/nbstripout

Consider stripping out only IMAGES as option

@rsvp do you still have this use case?

rsvp

comment created time in 2 months

issue commentkynan/nbstripout

Creating a branch with notebook outputs stripped

@psychemedia have you found a suitable workflow for your needs?

psychemedia

comment created time in 2 months

issue commentkynan/nbstripout

Possible to design a "smudge" git filter that reverses the stripping process?

@lukelbd is this still an issue for you?

lukelbd

comment created time in 2 months

issue commentkynan/nbstripout

Handle dot in metadata key name

Sorry for the late reply. One potential option I could see is specifying metadata keys as lists instead of dot separated strings. That's a bit of effort when also trying to maintain backwards compatibility. Given that JSON keys also cannot contain dots I think lobbying for your plugin to change their metadata seems like a better solution.

Let me know what you think and if you're still facing this issue.

karlicoss

comment created time in 2 months

issue commentkynan/nbstripout

nbstripout and git pull fails

@KrisThielemans @casperdcl any more thoughts on this?

KrisThielemans

comment created time in 2 months

issue commentkynan/nbstripout

Windows newlines in diff --cached after git add with nbstripout

@amard33p any update on this?

tgandor

comment created time in 2 months

issue commentkynan/nbstripout

Pre-commit hook fails when a notebook is only partially staged

@nix1 any update on this? Feel free to close if you consider this resolved.

nix1

comment created time in 2 months

issue commentkynan/nbstripout

Allow extra_keys as an argument when using a pre-commit hook

I've implemented --extra-keys. You can use them with pre-commit e.g. as follows:

repos:
- repo: https://github.com/kynan/nbstripout
  rev: fe88889c2a68efebd48a3bf8fe909b6788d62305
  hooks:
    - id: nbstripout
      args: [--extra-keys=metadata.celltoolbar]

Feel free to reopen if this doesn't meet your needs.

likewei92

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push eventkynan/nbstripout

Florian Rathgeber

commit sha cc425f4808e55a8abb1d69e73ae6ec375a4b2739

Ignore warnings from nbformat.{read,write}

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Florian Rathgeber

commit sha 5429b50d50a93ee6716f6bbc6cd25e10af00138b

Support nbformat 2 notebooks without cell metadata

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Florian Rathgeber

commit sha 1bdb06c1441825a9f672d1e962e1653de29888f1

Drop support for Python 3.4 (EOL 2019-03-18)

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Florian Rathgeber

commit sha 9f7d9f52ce1d6f9f145ab0352406d802a137dbc7

Add --extra-keys flag ro pass extra keys to strip Closes #119

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Florian Rathgeber

commit sha fe88889c2a68efebd48a3bf8fe909b6788d62305

Apply pre-commit hook to files of type Jupyter

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issue closedkynan/nbstripout

Allow extra_keys as an argument when using a pre-commit hook

Current extrakeys is only configurable through git config (--global) filter.nbstripout.extrakeys. It would be great if we can configure this when using nbstripout as part of a pre-commit hook as well!

closed time in 2 months

likewei92

startedgoogle/exposure-notifications-server

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startedgoogle/exposure-notifications-android

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issue commentmicrosoft/vscode-python

Select a Python Interpreter without modifying the workspace's settings.json

With deprecation of python.pythonPath, how will other extensions be able to get the currently selected interpreter path?

Tiedye

comment created time in 2 months

issue commentmicrosoft/vscode-python

Tweak settings to prevent accidental execution of code from within a workspace

FWIW, not setting python.pythonPath in .vscode/settings.json breaks other extensions that rely on that setting, like lextudio.restructuredtext.

brettcannon

comment created time in 2 months

issue commentmicrosoft/vscode-python

Interpreter selection not saved in workspace configuration

This still seems to be an issue with VS Code 1.45.1 and ms-python.python 2020.6.90262

Selecting an interpreter (either via the status bar or the dialog) is not setting python.pythonPath in .vscode/settings.json. This breaks other extensions that rely on that setting, like lextudio.restructuredtext.

schlamar

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startedmyint/rstcheck

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pull request commentconda-forge/staged-recipes

Add recipe for rstcheck

@conda-forge/help-python no idea why the build fails on Windows. Something appears to go wrong linking the entry-point executable?

kynan

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Florian Rathgeber

commit sha bffd035308d70a65d3ffb0d933b02b4117a8505e

Add recipe for rstcheck

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PR opened conda-forge/staged-recipes

Add recipe for rstcheck

Checklist

  • [x] Title of this PR is meaningful: e.g. "Adding my_nifty_package", not "updated meta.yaml"
  • [x] License file is packaged (see here for an example)
  • [x] Source is from official source
  • [x] Package does not vendor other packages. (If a package uses the source of another package, they should be separate packages or the licenses of all packages need to be packaged)
  • [ ] If static libraries are linked in, the license of the static library is packaged.
  • [x] Build number is 0
  • [x] A tarball (url) rather than a repo (e.g. git_url) is used in your recipe (see here for more details)
  • [x] GitHub users listed in the maintainer section have posted a comment confirming they are willing to be listed there
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create barnchkynan/staged-recipes

branch : rstcheck

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push eventkynan/staged-recipes

Eric Dill

commit sha 5afc0eb85de97643d4b3cc39f8c07f1304cda898

Add conda-lock (#11777) * Add conda-lock * Update meta.yaml * Update meta.yaml * Add setuptools to run and add pip check Co-authored-by: Filipe <ocefpaf@gmail.com> Co-authored-by: Marcelo Duarte Trevisani <marcelotrevisani@users.noreply.github.com>

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Removed recipes (conda-lock, pydrift) after converting into feedstocks. [ci skip]

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ndmaxar

commit sha ea87a0afc1123542999112bc39c2fa72662e7702

loosen eagerpy pin

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ndmaxar

commit sha 9cb78df9773c8a60c1c5e4373e844364afeb567e

Merge branch 'master' into r-ndjson

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ndmaxar

commit sha e461ffa3a964c2dbfa0fe27f387f2b619ccd6652

add maintainer team

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ndmaxar

commit sha b83e268577296897faabdf147d3443c81c341f36

try w/o all run reqs

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ndmaxar

commit sha 085d6b51768343881454f28db25e6533d3f9d9f1

only apispec old

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ndmaxar

commit sha c6929c8adcacde6d8e5ebbcff0e0465e1eb82404

basic apispec

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ndmaxar

commit sha 61fcc2347ebbf14f78f18946eb4f0ad507db5e1b

add setuptools

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Anthony Scopatz

commit sha a9c13dea86301cdcc9afeea777b620724167fcad

Merge pull request #11759 from rluria14/pytorch_spline_conv add pytorch_spline_conv

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Anthony Scopatz

commit sha 7bf3d92364d4b93a42c5e1e18424340caa0f8c6c

Merge pull request #11760 from rluria14/pytorch_scatter add pytorch_scatter

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Anthony Scopatz

commit sha ddc2d5793e8ad46d277ff938c770e80489b4497c

Merge pull request #11761 from rluria14/pytorch_sparse add pytorch_sparse

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Anthony Scopatz

commit sha d0a8fd9ef830a2b3fdaab3901124d630c59362ab

Merge pull request #11785 from hadim/argo add argo packages

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Anthony Scopatz

commit sha 03cd8b6bd190c9c975145504cc143081f8596547

Merge pull request #11718 from pariterre/master Added recipe for BiorbdOptim

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ndmaxar

commit sha ff0e473cdb4c2be11fbdff31d2da56521857f63b

cleanup

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ndmaxar

commit sha 037ffb882f6b860b80c2a50114729df694a039fd

remove numpy host

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Removed recipes (torch-sparse, torch-spline-conv) after converting into feedstocks. [ci skip]

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ndmaxar

commit sha 746bea4d9a70b99d6f0cc7c881d1278b1474999e

rm pin from apispec

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commit sha 395897404598b41119c6262a21dcbe3762ddef72

Removed recipe (torch-scatter) after converting into feedstock. [ci skip]

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Removed recipe (argo-workflows) after converting into feedstock. [ci skip]

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issue commentkynan/nbstripout

Allow extra_keys as an argument when using a pre-commit hook

Can you give me some examples of extra keys you want to pass on the command line? And do you have an example notebook I could use to test?

likewei92

comment created time in 2 months

startedjupyter/nbformat

started time in 2 months

issue openedmicrosoft/vscode-python

Cannot open nbformat 2 or 3 notebooks

Bug: Notebook Editor

Note: this is reopening #7731 which is locked.

Steps to cause the bug to occur

Try opening a Jupyter notebook in NBFormat v2 or v3.

Actual behavior

File is closed immediately and an error notification is shown:

test2.ipynb is not a valid notebook file. Check the file for correct json.

Expected behavior

Either open the file in the notebook editor (preferred) or offer the option of opening the file as JSON. As is, there is no way to open this file in VSCode at all if the Python extension is installed.

Your Jupyter and/or Python environment

Please provide as much info as you readily know

  • Jupyter server running: N/A
  • Extension version: 2020.6.90262
  • VS Code version: 1.45.1
  • Setting python.jediEnabled: false
  • Setting python.languageServer: Jedi
  • Python and/or Anaconda version: 3.6.10
  • OS: Linux (Debian):
  • Virtual environment: conda

Microsoft Data Science for VS Code Engineering Team: @rchiodo, @IanMatthewHuff, @DavidKutu, @DonJayamanne, @greazer, @joyceerhl

created time in 2 months

issue commentkynan/dokuvimki

Feature Request: Limit namespaces listed in index to those that are not empty

This seems to be working as intended for me i.e. as you describe you'd like it to be: I have a list of namespaces in cyan at the top followed by a list of pages in the root namespace.

What do you see? Can you give more information about the layout of your wiki? Or a screenshot or similar?

alazyworkaholic

comment created time in 2 months

push eventkynan/dokuvimki

Florian Rathgeber

commit sha 97d346da369624ca8cc82687cb4f8f583050ce15

Ignore any failures deleting a buffer when closing This may happen if the buffer was e.g. manually deleted before, because DokukuVimKi has no way of knowing about this. Closes #19

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issue closedkynan/dokuvimki

Unable to quit vim after editing files outside DokuWiki

The following commands will leave you stuck in DokuVimKi without being able to quit. Even qa! seems to be reinterpreted to DWquit!, which results in the same errors.

:Doku
:DWedit playground
:sp 
:e anyname
:ls
 10 #a    "playground"  line 1
 11 %a    "anyname"     line 1
:bd 10

:DWquit
Some buffers contain unsaved changes. Use DWquit! if you really want to quit.

:DWquit!

Error detected while processing function provider#python3#Call:
line 18:
Error invoking 'python_execute' on channel 4 (python3-script-host):
Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "<string>", line 605, in quit
  File "<string>", line 581, in close
  File "/usr/local/lib/python3.7/dist-packages/pynvim/api/nvim.py", line 287, in command
    return self.request('nvim_command', string, **kwargs)
  File "/usr/local/lib/python3.7/dist-packages/pynvim/api/nvim.py", line 182, in request
    res = self._session.request(name, *args, **kwargs)
  File "/usr/local/lib/python3.7/dist-packages/pynvim/msgpack_rpc/session.py", line 104, in request
    raise self.error_wrapper(err)
pynvim.api.common.NvimError: Vim(bdelete):E516: No buffers were deleted

:bd 11
:DWquit!

Error detected while processing function proider#python3#Call:
line  18:
Error invoking 'python_execute' on channel 4 (python3-script-host):
Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "<string>", line 605 , in quit
  File "<string>", line 580, in close
  File "/usr/local/lib/python3.7/dist-packages/pynvim/api/nvim.py", line 287, in command
    return self.request('nvim_command', string, **kwargs)
  File "/usr/local/lib/python3.7/dist-packages/pynvim/api/nvim.py", line 182, in request
    res = self._session.request(name, *args, **kwargs)
  File "/usr/local/lib/python3.7/dist-packages/pynvim/msgpack_rpc/session.py", line 104, in request
    raise self.error_wrapper(err)
pynvim.api.common.NvimError: Vim(bprevious):E85: There is no listed buffer

closed time in 2 months

alazyworkaholic

issue commentkynan/dokuvimki

Unable to quit vim after editing files outside DokuWiki

It looks like the problem is manually deleting the buffer. When you exit, we try to delete this buffer since it's still in DokuVimKi's buffer list, but no longer in vim's.

Solving this properly would require DokuVimKi intercepting a buffer delete and removing a deleted buffer from its state. Not sure this is even possible.

I will try simply ignoring the failure on buffer deletion.

alazyworkaholic

comment created time in 2 months

issue commentkynan/nbstripout

please add -r flag

You can the really easily by just recursively finding all the files you want and pass them to nbstripout:

find . -name *.ipynb -exec nbstripout {} +

I'd prefer to leave functionality for selecting input out of nbstripout.

AndrewLouw

comment created time in 2 months

startedhadolint/hadolint

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issue commentkynan/nbstripout

Allow extra_keys as an argument when using a pre-commit hook

Thanks, I'll have a look whether we want to support either or both.

likewei92

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push eventkynan/nbstripout

Casper da Costa-Luis

commit sha 8daf6b8f337bcd00a40a2fd332a3a3d3a3aff0d0

fix attempting to install on python2

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PR merged kynan/nbstripout

fix attempting to install on python2 resolution:merged type:bug type:packaging

The nbstripout==0.3.8 package was not built & released correctly, which means that pip install -U nbstripout will incorrectly install an incompatible version on python2 (e.g. https://github.com/SyneRBI/SyneRBI_VM/issues/169)

This PR fixes this issue in future.

+1 -0

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casperdcl

pr closed time in 2 months

pull request commentkynan/nbstripout

fix attempting to install on python2

Thanks, good catch! Unfortunately I can no longer fix the "broken" 0.3.8 release, but this will go into the next release.

casperdcl

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push eventkynan/nbstripout

Florian Rathgeber

commit sha 5b0d7f313e5a87fa2fd448c801e8414be59b2151

nbstripout >= 0.3.8 is Python 3 only #128

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issue commentkynan/nbstripout

0.3.8 version is not compatible with Python 2 but installed by pip

Thanks, will add a note that Python 2 is no longer supported.

paskino

comment created time in 2 months

fork kynan/community

This repository holds the content submitted to https://cloud.google.com/community. Files added to the tutorials/ will appear at https://cloud.google.com/community/tutorials.

https://cloud.google.com/community

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Florian Rathgeber

commit sha f20117a0f4ba5113adc5f87bd35212524765f1af

Set long_description_content_type to text/x-rst

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regro-cf-autotick-bot

commit sha 61727761dafb82fab0f079dd1cec894f9b0d166a

updated v0.3.8

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regro-cf-autotick-bot

commit sha 7d5930a5435f4bca93997c561e07783ae4e9ff97

MNT: Re-rendered with conda-build 3.19.2, conda-smithy 3.7.3, and conda-forge-pinning 2020.06.06.18.33.32

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Florian Rathgeber

commit sha 12d8d894e1b8fffcb324a6186b6eb14a04a180cd

Merge pull request #15 from regro-cf-autotick-bot/0.3.8_h1185f0 nbstripout v0.3.8

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PR merged conda-forge/nbstripout-feedstock

nbstripout v0.3.8

It is very likely that the current package version for this feedstock is out of date. Notes for merging this PR:

  1. Feel free to push to the bot's branch to update this PR if needed.
  2. The bot will almost always only open one PR per version. Checklist before merging this PR:
  • [ ] Dependencies have been updated if changed: see upstream
  • [ ] Tests have passed
  • [ ] Updated license if changed and license_file is packaged

Note that the bot will stop issuing PRs if more than 3 Version bump PRs generated by the bot are open. If you don't want to package a particular version please close the PR.

NEW: If you want these PRs to be merged automatically, make an issue with <code>@conda-forge-admin,</code>please add bot automerge in the title and merge the resulting PR. This command will add our new bot automerge feature to your feedstock!

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<sub>This PR was created by the regro-cf-autotick-bot. The regro-cf-autotick-bot is a service to automatically track the dependency graph, migrate packages, and propose package version updates for conda-forge. If you would like a local version of this bot, you might consider using rever. Rever is a tool for automating software releases and forms the backbone of the bot's conda-forge PRing capability. Rever is both conda (conda install -c conda-forge rever) and pip (pip install re-ver) installable. Finally, feel free to drop us a line if there are any issues! This PR was generated by https://circleci.com/gh/regro/circle_worker/22247, please use this URL for debugging</sub>

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6 changed files

regro-cf-autotick-bot

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issue commentipython/ipython

My notebook(.ipynb) won't open!

Thanks for reporting this @takluyver ! This is fixed in nbstripout 0.3.8 which I have just released.

Pedrosorio99

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push eventkynan/nbstripout

Florian Rathgeber

commit sha 47858bab06cab8c179753d896b6922596afef051

Fix flake8 lint errors

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Florian Rathgeber

commit sha 0dabc5687f53c902290f70a6ed06f1c5f83218e1

Test Python 3.7 / 3.8 with Travis, drop 2.7

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Florian Rathgeber

commit sha 05acd65fe896ce01dc7adb8264e5e1c1f068a972

Drop 2.7 and 3.3 from AppVeyor, add 3.7 and 3.8

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Florian Rathgeber

commit sha 9d231f9ea16950d1dbc9032f882517b109a70afc

Update badges

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Florian Rathgeber

commit sha 787ddc9ac78db61b8db91874f0e073497ecb3da6

Drop Python 2 support

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Florian Rathgeber

commit sha bf9255b54c38ee83d20af21dd2fff9f6451928c9

Bump version: 0.3.7 → 0.3.8

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created tagkynan/nbstripout

tag0.3.8

strip output from Jupyter and IPython notebooks

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Florian Rathgeber

commit sha 3b179c098756a75595005d2fd90f0ecef5135691

Update changelog

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Florian Rathgeber

commit sha 608425cd949661050e5a12dac25527a6b3542d2a

Bump version: 0.3.7 → 0.3.8

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issue commentkynan/nbstripout

--install --global must be run in a git repository

There were a few reasons why also the --global variant of --install needed to be run from within a git repo (as did the --global variants of --status and --uninstall). That's now fixed.

puddyput

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push eventkynan/nbstripout

Florian Rathgeber

commit sha 757e8dd6489a3d5d1956502794b4ae9f4d72e764

Make --global commands independent of git repo `nbstripout --{install,uninstall,status} --global` can now be run outside a git repository. Fixes #123

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issue closedkynan/nbstripout

--install --global must be run in a git repository

$ nbstripout --install --global
fatal: not a git repository (or any parent up to mount point /home)
Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
Installation failed: not a git repository!

I'm surprised by this behaviour, shouldn't this be independent of a git repo?

closed time in 2 months

puddyput

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Florian Rathgeber

commit sha 7b237c44fa5e5024ae5686a6260a799da406e88f

Strip execution timing from cell metadata Closes #118

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Florian Rathgeber

commit sha 2213ce3385d9ce013a4637b24a6daa6afb6cdb7b

Document which metadata is stripped by default

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issue closedkynan/nbstripout

Strip execution timing by default

Removing execution timing seems in line with the rest of the defaults. Today this can be done via:

git config filter.nbstripout.extrakeys cell.metadata.execution

Can this be changed to be the default?

closed time in 2 months

mlucool

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ooiM

commit sha 6216a3e6ec4055695e5f3bdadd7218fb2a0a073f

add newline param to open and TextIOWrapper method

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