Javascript library for converting MathML to LaTeX, based on the MathParser Java library
Open Knesset Templates
Frontend web server for Open Knesset.
:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java framework for processing biological data.
Bringing quick and beautiful math-typesetting to HTML5's canvas.
The Python programming language
Chromium OS Universal Chroot Environment
issue commentRosettaCommons/PyRosetta.notebooks
@jadolfbr Much agreed! Ideally those cells were tested before merging, but if I recall correctly those debug statements added in #51 were merely intended as a temporary workaround to permit scheduling 03 PyRosetta
unit tests from PRs in RosettaCommons/main
(otherwise PyRosetta tests always were failing). Those notebooks cells still need to be addressed.
comment created time in 4 hours
issue commentRosettaCommons/PyRosetta.notebooks
Those unit test errors were basically saying that this notebook was broken. Without that - I'm not quite understanding why the testing is happening in first place?
comment created time in 5 hours
issue commentRosettaCommons/PyRosetta.notebooks
I may have added debug statements to cells of certain notebooks that produced unit test errors. If you remove dubug statements, please open a PR in RosettaCommons/main
, pull in Pyrosetta.notebooks submodule updates, and schedule the 03 PyRosetta
tests to queue PyRosetta4.notebook
unit tests.
comment created time in 5 hours
issue openedRosettaCommons/PyRosetta.notebooks
The function signature has changed for the parser and this needs to be fixed. Also, debug statements should only not run for long components. Not sure where that part changed. I have a branch with this fixed, but for some reason, can't push to the repo.
created time in 10 hours
startedkwikwag/mathml2latex
started time in 16 hours
issue closedRosettaCommons/PyRosetta.notebooks
cdr_selector = CDRResidueSelector() SmallKeyVector.hh line: 548
cdr_selector = CDRResidueSelector()
ERROR: Assertion active( key )
failed.
ERROR:: Exit from: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-3.4.2/python-3.8/release/source/src/utility/keys/SmallKeyVector.hh line: 548
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
RuntimeError:
File: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-3.4.2/python-3.8/release/source/src/utility/keys/SmallKeyVector.hh:548
[ ERROR ] UtilityExitException
ERROR: Assertion active( key )
failed.
closed time in 5 days
jiyanbioissue commentRosettaCommons/PyRosetta.notebooks
cdr_selector = CDRResidueSelector() SmallKeyVector.hh line: 548
sorry, I forgot run init().
comment created time in 5 days
issue commentRosettaCommons/PyRosetta.notebooks
cdr_selector = CDRResidueSelector() SmallKeyVector.hh line: 548
Is this from a notebook you ran as is, or from your own programming?
If the latter, my initial guess is that you forgot to call the init() function prior to calling other PyRosetta functions.
comment created time in 5 days
issue openedRosettaCommons/PyRosetta.notebooks
cdr_selector = CDRResidueSelector() SmallKeyVector.hh line: 548
cdr_selector = CDRResidueSelector()
ERROR: Assertion active( key )
failed.
ERROR:: Exit from: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-3.4.2/python-3.8/release/source/src/utility/keys/SmallKeyVector.hh line: 548
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
RuntimeError:
File: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-3.4.2/python-3.8/release/source/src/utility/keys/SmallKeyVector.hh:548
[ ERROR ] UtilityExitException
ERROR: Assertion active( key )
failed.
created time in 5 days
delete branch RosettaCommons/pybind11
delete branch : dependabot/github_actions/jwlawson/actions-setup-cmake-v1.6
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push eventRosettaCommons/pybind11
commit sha 5d608906aa6f2f9586d65c0022cb5d29a759e6ed
chore(deps): update jwlawson/actions-setup-cmake requirement to v1.6 Updates the requirements on [jwlawson/actions-setup-cmake](https://github.com/jwlawson/actions-setup-cmake) to permit the latest version. - [Release notes](https://github.com/jwlawson/actions-setup-cmake/releases) - [Commits](https://github.com/jwlawson/actions-setup-cmake/commits/0a4250e9746afbf8007d5fc3b26e5b0577e332b9) Signed-off-by: dependabot[bot] <support@github.com>
commit sha 32c4d7e17f267e10e71138a78d559b1eef17c909
Merge pull request #2 from RosettaCommons/dependabot/github_actions/jwlawson/actions-setup-cmake-v1.6 chore(deps): update jwlawson/actions-setup-cmake requirement to v1.6
push time in 8 days
PR merged RosettaCommons/pybind11
Updates the requirements on jwlawson/actions-setup-cmake to permit the latest version. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://github.com/jwlawson/actions-setup-cmake/releases">jwlawson/actions-setup-cmake's releases</a>.</em></p> <blockquote> <h2>v1.6</h2> <ul> <li>Fix incorrectly selecting invalid architecture packages</li> <li>Update dependencies</li> </ul> </blockquote> </details> <details> <summary>Commits</summary> <ul> <li>See full diff in <a href="https://github.com/jwlawson/actions-setup-cmake/commits/0a4250e9746afbf8007d5fc3b26e5b0577e332b9">compare view</a></li> </ul> </details> <br />
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delete branch RosettaCommons/pybind11
delete branch : dependabot/github_actions/jwlawson/actions-setup-cmake-v1.5
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PR closed RosettaCommons/pybind11
Updates the requirements on jwlawson/actions-setup-cmake to permit the latest version. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://github.com/jwlawson/actions-setup-cmake/releases">jwlawson/actions-setup-cmake's releases</a>.</em></p> <blockquote> <h2>v1.5</h2> <ul> <li>Fix handling the new universal macos packages provided in cmake 3.19.2+</li> <li>Improve platform testing</li> <li>Update dependencies</li> </ul> </blockquote> </details> <details> <summary>Commits</summary> <ul> <li>See full diff in <a href="https://github.com/jwlawson/actions-setup-cmake/commits/b2390a7ca23f349493e575bbb2d838e99b9cb42d">compare view</a></li> </ul> </details> <br />
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pull request commentRosettaCommons/pybind11
chore(deps): update jwlawson/actions-setup-cmake requirement to v1.5
Superseded by #2.
comment created time in 9 days
create barnchRosettaCommons/pybind11
branch : dependabot/github_actions/jwlawson/actions-setup-cmake-v1.6
created branch time in 9 days
PR opened RosettaCommons/pybind11
Updates the requirements on jwlawson/actions-setup-cmake to permit the latest version. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://github.com/jwlawson/actions-setup-cmake/releases">jwlawson/actions-setup-cmake's releases</a>.</em></p> <blockquote> <h2>v1.6</h2> <ul> <li>Fix incorrectly selecting invalid architecture packages</li> <li>Update dependencies</li> </ul> </blockquote> </details> <details> <summary>Commits</summary> <ul> <li>See full diff in <a href="https://github.com/jwlawson/actions-setup-cmake/commits/0a4250e9746afbf8007d5fc3b26e5b0577e332b9">compare view</a></li> </ul> </details> <br />
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issue openedkwikwag/mathml2latex
`let obj = new MathMLParser()
obj.parse('<math xmlns="http://www.w3.org/1998/Math/MathML"><mover><mrow><mi>A</mi><mi>B</mi></mrow><mo>→</mo></mover></math>')`
在执行parse后页面卡死 @是因为使用方法有问题吗?麻烦提供测试案例
请提供具体使用测试用例,谢谢
created time in 11 days
create barnchRosettaCommons/pybind11
branch : dependabot/github_actions/jwlawson/actions-setup-cmake-v1.5
created branch time in a month
PR opened RosettaCommons/pybind11
Updates the requirements on jwlawson/actions-setup-cmake to permit the latest version. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://github.com/jwlawson/actions-setup-cmake/releases">jwlawson/actions-setup-cmake's releases</a>.</em></p> <blockquote> <h2>v1.5</h2> <ul> <li>Fix handling the new universal macos packages provided in cmake 3.19.2+</li> <li>Improve platform testing</li> <li>Update dependencies</li> </ul> </blockquote> </details> <details> <summary>Commits</summary> <ul> <li>See full diff in <a href="https://github.com/jwlawson/actions-setup-cmake/commits/b2390a7ca23f349493e575bbb2d838e99b9cb42d">compare view</a></li> </ul> </details> <br />
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push eventRosettaCommons/binder
commit sha 22b85e31581a1236914f19737c9050bcbae614dd
fixing return_value_policy example
push time in a month
issue closedRosettaCommons/binder
Typo in documentation of return value policy config parameter
The example
+default_pointer_return_value_policy pybind11::return_value_policy::reference
at the bottom of this page https://cppbinder.readthedocs.io/en/latest/config.html#config-file-directives
is not handled in code. Possibly this line should be
+default_member_pointer_return_value_policy pybind11::return_value_policy::reference
closed time in a month
MartinKielhornPhilipsissue commentRosettaCommons/binder
Typo in documentation of return value policy config parameter
Thank you for letting me know @MartinKielhornPhilips ! This should be fixed in 3e65a2f0469268e7a87504c4f83866ab62a63edc
comment created time in a month
push eventRosettaCommons/binder
commit sha 3e65a2f0469268e7a87504c4f83866ab62a63edc
fixing return_value_policy example
push time in a month
issue openedRosettaCommons/binder
Typo in documentation of return value policy config parameter
The example
+default_pointer_return_value_policy pybind11::return_value_policy::reference
at the bottom of this page https://cppbinder.readthedocs.io/en/latest/config.html#config-file-directives
is not handled in code. Possibly this line should be
+default_member_pointer_return_value_policy pybind11::return_value_policy::reference
created time in a month
issue closedRosettaCommons/binder
Hi, I'm thinking about testing this for one of the research projects I participate on and went over the install instructions -- I was just wondering if the release_60 for clang/llvm is a requiremement? Or can I use later/more modern LLVM releases? Thanks for the work on the project -- looks great!
closed time in a month
jtrmalissue commentRosettaCommons/binder
thanks a lot! y.
On Thu, Dec 10, 2020 at 17:16 andriish notifications@github.com wrote:
Hi @jtrmal https://github.com/jtrmal ,
The CI tests binder using versions of LLVM up to 11 (as comes witj Fedora), I think.
Best regards,
Andrii
— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/RosettaCommons/binder/issues/148#issuecomment-742622534, or unsubscribe https://github.com/notifications/unsubscribe-auth/ACUKYXZQFP3YJQWTXYDSMGDSUDX7DANCNFSM4UVF3M5A .
comment created time in a month
issue commentRosettaCommons/binder
Hi @jtrmal ,
The CI tests binder using versions of LLVM up to 11 (as comes witj Fedora), I think.
Best regards,
Andrii
comment created time in a month
issue openedRosettaCommons/binder
Hi, I'm thinking about testing this for one of the research projects I participate on and went over the install instructions -- I was just wondering if the release_60 for clang/llvm is a requiremement? Or can I use later/more modern LLVM releases? Thanks for the work on the project -- looks great!
created time in a month
push eventRosettaCommons/binder
commit sha 9a7d391d6ea523779ec9d1a3573be070341a32e5
Expanded support to anonymous union.
commit sha 68c81340f083fb97f767ce6064ebb3f6c098d4a1
Moved test to more appropriate section.
commit sha d55ac5c5cd2ec9ea674d23529480b8c1a6628008
Merge pull request #147 from AzaelCicero/master adding bindings generation for anonymous unions
push time in a month